FastQCFastQC Report
Thu 9 May 2024
EGAF00002035880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51274680
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1038550.20254636401436343No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA647740.1263274583088573No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA609920.11895149808833522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)