FastQCFastQC Report
Sun 12 May 2024
EGAF00002035886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107579102
Total Bases5.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1804170.16770636363928748No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA1234490.11475184092910537No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1160050.10783228140350158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)