FastQCFastQC Report
Wed 8 May 2024
EGAF00002035900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11881705
Total Bases605.9 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA439640.3700142361723338No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG144780.12185119896513169No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC127930.10766973258467534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)