FastQCFastQC Report
Fri 10 May 2024
EGAF00002035910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53739356
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1839890.3423729156709656No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA899390.16736151434341714No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC812130.15112388023406906No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC622490.11583503159211658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)