FastQCFastQC Report
Wed 8 May 2024
EGAF00002035922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22165894
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA289240.1304887589916292No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC239510.10805339049261899No Hit
GTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCA232750.10500366012758158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)