FastQCFastQC Report
Sun 12 May 2024
EGAF00002035928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85768524
Total Bases4.3 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA5695630.6640699564796055No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC1230280.1434418995015001No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG1088320.12689037297645464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)