FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002035943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40040324
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA652910.16306311607268711No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG563790.14080555392109215No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGT416670.10406259449848608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)