FastQCFastQC Report
Sat 11 May 2024
EGAF00002036046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002036046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39409435
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2709870.6876196017527275No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA514940.13066414172139235No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG401750.10194259318866154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)