FastQCFastQC Report
Sun 12 May 2024
EGAF00002036060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002036060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74905475
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA8097551.0810357987850687No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC1450920.19370012672638415No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG1304930.17421022962607205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)