FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002036062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002036062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66743990
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG2800580.41960032656123797No Hit
CTCAACTTTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGCA1943780.29122921779174427No Hit
CCTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAGG1831550.27441422066616034No Hit
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTG1691300.2534010927425825No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA1523920.22832317936041882No Hit
CCACGGTGAGCTTGCTGTAGAGGAAGAAGGAGCCGTCGGAGTCCAGCACGG1505180.22551543592164627No Hit
GTAGTGGTTGTGCAGAGCCTCATGCATCACGGAGCATGAGAAGACGTTCCC1440900.21588460623945316No Hit
CTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTGGAGGG1383370.20726510356962477No Hit
CTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAGGAGCCGTCGGAGTCC1272930.1907182953850976No Hit
GTCCACGGTGAGCTTGCTGTAGAGGAAGAAGGAGCCGTCGGAGTCCAGCAC1258320.1885293342516682No Hit
CCCTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAG1198830.1796161721826939No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACG1025540.1536527858163709No Hit
GTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTGTTCTCCGGCTGCCC1020410.1528841772869737No Hit
CTGCTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAGGAGCCGTCGGAG980700.14693457792978815No Hit
CCACGCTGCTGAGGGAGTAGAGTCCTGAGGACTGTAGGACAGCCGGGAAGG943510.14136254065721873No Hit
CGGTGAGCTTGCTGTAGAGGAAGAAGGAGCCGTCGGAGTCCAGCACGGGAG936100.14025232833697834No Hit
GCTCAACTTTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGC934100.13995267588887028No Hit
CTTGTAGTTGTTCTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTC922740.1382506499836165No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT907350.13594482439542496No Hit
CTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTCGCTGGGATAGAA882810.13226808885713903No Hit
TTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTGGAGGGC875660.13119683135515273No Hit
GTAGAGTCCTGAGGACTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGT873810.13091965284065277No Hit
GGCTCTTCTGCGTGTAGTGGTTGTGCAGAGCCTCATGCATCACGGAGCATG861000.12900037891052063No Hit
GGAGTAGAGTCCTGAGGACTGTAGGACAGCCGGGAAGGTGTGCACGCCGCT857690.1285044541089018No Hit
CTTGGCATTATGCACCTCCACGCCGTCCACGTACCAGTTGAACTTGACCTC849220.12723542599116416No Hit
CTGGAGGGCACGGTCACCACGCTGCTGAGGGAGTAGAGTCCTGAGGACTGT827670.12400667086279978No Hit
CCGGAGACAGGGAGAGGCTCTTCTGCGTGTAGTGGTTGTGCAGAGCCTCAT808370.12111502473855698No Hit
CTCTGACTTGCCCGGCAAGTGATGGTGACTCTGTCTCCTACAGATGCAGAC804560.12054418682491114No Hit
CTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAGGA791390.11857097545411954No Hit
AGGGAGTAGAGTCCTGAGGACTGTAGGACAGCCGGGAAGGTGTGCACGCCG758010.11356977609519599No Hit
GTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTG725110.10864049332381838No Hit
CCGGCAAGTGATGGTGACTCTGTCTCCTACAGATGCAGACAGGGAGGATGG717830.10754975841270502No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG704190.10550612871660803No Hit
CTGACGGCAGTTGCAGCCAAGCAACGCCAGAAAGCCGGCTTCACGCTCAGG703470.10539825383528913No Hit
GTGGTCTTGTAGTTGTTCTCCGGCTGCCCATTGCTCTCCCACTCCACGGCG687090.10294410028528411No Hit
CGTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTGTTCTCCGGCTGCC669170.10025921435023587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)