FastQCFastQC Report
Sun 12 May 2024
EGAF00002036076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002036076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86950159
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA3304840.38008441134650484No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1730920.19907036627730607No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA1445620.16625846538129965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)