FastQCFastQC Report
Wed 8 May 2024
EGAF00002036078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002036078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9645094
Total Bases491.8 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA525340.5446706895754464No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG125180.129786189745792No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC101190.10491344096801959No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)