FastQCFastQC Report
Thu 9 May 2024
EGAF00002036094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002036094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48044745
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA2212040.4604124759117777No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC685700.14272112381905658No Hit
CTTCAATCCATCCAGACCATTGTGTCCCCTAATGCCTTTGAAGCCAGGAA513180.10681293032151591No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)