FastQCFastQC Report
Sun 12 May 2024
EGAF00002036102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002036102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62723581
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1981020.3158333705468761No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA948110.15115686714379398No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA931890.14857091784985937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)