FastQCFastQC Report
Fri 10 May 2024
EGAF00002036146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002036146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58183519
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1817300.31233930694360373No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA1032400.17743856297175836No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA926390.15921862684173502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)