FastQCFastQC Report
Sat 11 May 2024
EGAF00002036154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002036154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45407459
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1822920.40145827142628704No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA797930.17572663557324358No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC593160.13063052041736137No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC536930.11824709239951084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)