FastQCFastQC Report
Thu 9 May 2024
EGAF00002036160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002036160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50801430
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1435740.2826180286657285No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA651570.12825820060577037No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA551920.10864261104461036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)