FastQCFastQC Report
Sat 11 May 2024
EGAF00002036171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002036171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35482927
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA418390.11791304589951106No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA412750.11632354906910582No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC411690.11602481384920699No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)