FastQCFastQC Report
Thu 9 Feb 2023
EGAF00002041222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002041222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91106943
Sequences flagged as poor quality0
Sequence length18-150
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC2645260.29034669728738455No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2214980.24311868306238746No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT998560.1096030628532888No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT982560.10784688495145754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)