FastQCFastQC Report
Fri 10 Feb 2023
EGAF00002041392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002041392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111929151
Sequences flagged as poor quality0
Sequence length18-150
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC2535620.2265379463121274No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2239630.20009353952841116No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT1589630.14202108975167693No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1544690.13800604991634396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)