FastQCFastQC Report
Thu 23 Feb 2023
EGAF00002041420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002041420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80801391
Sequences flagged as poor quality0
Sequence length18-150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC3203860.3965105006669996No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT3058420.3785108105379027No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT1472660.1822567633767592No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1420010.17574078644264923No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG940940.1164509655533034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)