FastQCFastQC Report
Fri 24 Feb 2023
EGAF00002044438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002044438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77419245
Sequences flagged as poor quality0
Sequence length126
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC815080.10528131603453378No Hit
CAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAA788750.10188035287608398No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC778460.1005512259903852No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)