FastQCFastQC Report
Thu 9 May 2024
EGAF00002049257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002049257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3454139
Total Bases217.6 Mbp
Sequences flagged as poor quality0
Sequence length63
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA905352.6210583882119396No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA112430.32549356004492No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA61910.1792342462188117No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC36760.10642304782754834No Hit

[OK]Adapter Content

Adapter graph