FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002049742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002049742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5132844
Sequences flagged as poor quality0
Sequence length0-125
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGCAATTTAACTGTGATAAACTACCGCATTAAAAAAAAAA639601.2460928093665031No Hit
TTAGCAATTTAACTGTGATAAACTACCGCATTAAAAAAAAA584581.1389007731386342No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN230560.44918567562154627No Hit
TTTTTTTTTAATGCGGTAGTTTATCACAGTTAAATTGCTAA226420.44111997169600325No Hit
TTAGCAATTTAACTGTGATAAACTACCGCATT214390.41768267260801223No Hit
TTAGCAATTTAACTGTGATAAACTACCGCATTA206440.4021941831857738No Hit
AATGCGGTAGTTTATCACAGTTAAATTGCTAA185570.36153446315531895No Hit
TTTTTTTTTTAATGCGGTAGTTTATCACAGTTAAATTGCTAA154890.30176253164912087No Hit
153650.2993467169467843No Hit
TTAGCAATTTAACTGTGATAAACTACCGCATTAAAAAAAAAAA114110.2223133997448588No Hit
TAGCAATTTAACTGTGATAAACTACCGCATTAAAAAAAAAA98990.19285604627765815No Hit
TTAGCAATTTAACTGTGATAAACTACCGCATTAAAAAAAA98370.19164813892648988No Hit
TAATGCGGTAGTTTATCACAGTTAAATTGCTAA93140.18145885594808647No Hit
TAGCAATTTAACTGTGATAAACTACCGCATTAAAAAAAAA80250.1563460724697653No Hit
TTAGCAATTTAACTGTGATAAACTACCGCAT72830.14189014900900943No Hit
TTTTTTTTTAATGCGGTAGTTTATCACAGTTAAATTGCTA56240.10956888617694206No Hit
GTAGCTGTTAGAAGGCTGGCTCCCATGCTGTTCTAACAC52350.10199024166719269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)