FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002050804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002050804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4788820
Sequences flagged as poor quality0
Sequence length0-125
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN206550.4313171094340569No Hit
AATGCGGTAGTTTATCACAGT155960.3256752185298257No Hit
AATGCGGTAGTTTATCACAGTTAATTGCTAA93600.19545524784811288No Hit
TTAGCAATTTAACTGTGATAAACTACCGCATTAAAAAAAAAA73900.15431776512794385No Hit
55990.11691815520316069No Hit
TTAGCAATTTAACTGTGATAAACTACCGCATTAAAAAAAAA54010.11278352496021984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)