FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002058706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002058706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2729066
Sequences flagged as poor quality0
Sequence length151
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGGCGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGT360961.3226503133306413No Hit
CAGGGCCGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGT235870.8642883682549267No Hit
GCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAG109490.4011995312682068No Hit
TCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAG86200.3158589788594339No Hit
CCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAG55830.20457548479956145No Hit
CAGGGCGGTCCCTGAGACTCTCCTGGCAGGTCACCGTCTCCTCAGGTGAG53340.19545148413413235No Hit
CGGGGACCCTGTCCCTCACCTGCACTGTCTCTGGTGCCTCCATCAGTAAT48850.17899896887799707No Hit
CAGGGCGGTCCCTGAGACTCTCCTGGCAGGTCACCGTCTCCTCAGGTAAG47760.17500492842606225No Hit
CGGGGACCCTGTCCCTCACCTGTGCCATCTCCGGGGACAGTGTCTCTAGC39810.14587408292800538No Hit
GAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCAC36850.13502788133376034No Hit
CAGGGCCGTCCCTGAGACTCTCCTGGCAGGTCACCGTCTCCTCAGGTGAG34930.12799250732668246No Hit
GGCTGGGGGGTCCCTGAAACTCTCCTGTGCAGCCTCTGGATTCACCTTCA33740.12363204114521231No Hit
CAGGGCCGTCCCTGAGACTCTCCTGGCAGGTCACCGTCTCCTCAGGTAAG30430.11150334949759369No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)