FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002063348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002063348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36020202
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTAATCTCGTAT1411870.39196615277171404TruSeq Adapter, Index 22 (97% over 40bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT472620.1312097028217665No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA464090.12884158728482423No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT396720.11013819411673482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)