FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002063413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002063413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43435994
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA991090.2281725151725548No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN885410.2038424630043001No Hit
CCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT870260.20035457229319997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)