FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002063414

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002063414
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40676404
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1292040.31763869785539545No Hit
GCTTAATATAAAATAACCACATTAGTGAACATTATATCTCTTAGAAGAAA885930.21779948886337153No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT694670.17077959988793504No Hit
GCATAATCGTATCATTCAAGATTAAGTCTGGGTTATTTCTTTGATAAGAA672510.165331724013755No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT598510.14713935872994083No Hit
CTAAGATCTATTTAAGATAACCTTTTCTTATATTTTTTACTTAATATTGG561900.13813905476993493No Hit
CTCAGATTTAATCATAATACATGAATTAAATTAATCAAATTAAGGAACAG525940.12929854861309767No Hit
CTCCTTTAAAAATTTCATATTGCCCAACAAAAAGTGGTTATTTTTACTGT482200.11854538567371885No Hit
CCATAATCAGTGCTTCTGTCTCCAGCATTGTAGTTTGTAGCTCGTGTGTT437860.10764471706987669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)