FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002063471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002063471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44079600
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA947500.2149520413070899No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN921640.20908538190001724No Hit
CCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT506030.11479913610831313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)