FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002128960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002128960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences770109
Sequences flagged as poor quality0
Sequence length20-100
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27150.35254749652321943No Hit
ATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGG26880.3490414993202261No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC22050.286323104911123No Hit
GTCCAGGTTGGAGGCATCTCTGACACCAATCAGATCTTCGGCCTGAGCGA20550.2668453426722711No Hit
CTCCTGCACCATGCCCTGCATAGCTGTGGTGGCCTCATCCACGGACAGAG19930.2587945342802123No Hit
AACCTGGACAGTGTCGTATCCGAGGATGCCTGTCATGCTGCCGGTGCCGT18590.2413944000135046No Hit
CATCTAAAGTGGGCACAGGACAGAGGCCAGATCTTCCTGGGAGGTGGCTG18250.23697944057269818No Hit
TGCCTGCACCAACCACAACCGCTTCAACCCTGAGGATTCTTCCACCTACC17560.22801966994282627No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA17350.225292783229387No Hit
ACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTT15830.20555531749401706No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT15480.20101050630495165No Hit
GTCGAAGACGGTAAAGTACTGGCGGATGAAGACATCACCCAGGATCCAAA15350.19932243357758447No Hit
GTCCAGTACCCCGTGCCACCCAGTGCCTACATCCTGCAGAGCGAGGGGAG14750.1915313286820437No Hit
TGGACTCCATTGATGGTGAAGACGATGTCGGGCAGGCTGCTGATGGCTGA14380.18672681399646024No Hit
ACCGTGGACAGCATCACCATGAACGGAGAGGCCATCGCCTGCGCTGAGGG13120.17036549371582463No Hit
GGGTACTGGACTCCATTGATGGTGAAGACGATGTCGGGCAGGCTGCTGAT12730.16530127553372315No Hit
GGACAGAGGCCAGATCTTCCTGGGAGGTGGCTGAAGAGACTTAGGCTTAA11860.15400417343518905No Hit
GGGTGGCACGGGGTACTGGACTCCATTGATGGTGAAGACGATGTCGGGCA11670.1515369902182678No Hit
CCAGTACCCCGTGCCACCCAGTGCCTACATCCTGCAGAGCGAGGGGAGCT11230.14582351329487123No Hit
GTGCCTACATCCTGCAGAGCGAGGGGAGCTGCATCAGTGGCTTCCAGGGC10770.13985033287495666No Hit
GGGTAGGCCAGGCCCATGATGCCATCAAACTGCGCATAGACGAAGTTGGT10750.13959062937843864No Hit
GGCCTGCACCAGTCACTCCCGCTTCAACCCCAGCGAGTCGTCCACCTACT10430.13543537343415024No Hit
GTGCAGGCAAGACTGGAGCAGTAGACTGAGGGCACCCACAGGTTGGAGGA10250.13309804196548802No Hit
GGCCAGGCCGACCTGGTTGTTTGCCCTGTCGAAGACGGTAAAGTACTGGC10040.13037115525204873No Hit
GTGCAGGAGGGCGCCCTCACCAGCCCCGTCTTCAGCGTCTACCTCAGCAA10020.1301114517555307No Hit
GCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCG9910.12868308252468155No Hit
CCCTAGGAGGGTGCAGGGTCAAGAGGAAGAGGGGAGCCCACGTGTCGAGG9800.12725471329383245No Hit
GAGGTAGACAGAGAAGAGGTCCTGAGAAACCAGGCCCTGGTTCCAGATGT9650.12530693706994722No Hit
GTGTCAGAGATGCCTCCAACCTGGACAGTGTCGTATCCGAGGATGCCTGT9490.12322930909780304No Hit
GTGCCACCCAGTGCCTACATCCTGCAGAGCGAGGGGAGCTGCATCAGTGG9120.11842479441221956No Hit
GTCTACCTCAGCGCCGATGACCAGAGTGGCAGCGTGGTGATCTTTGGTGG9020.11712627692962943No Hit
TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCC8960.11634716644007537No Hit
AACCACAACCGCTTCAACCCTGAGGATTCTTCCACCTACCAGTCCACCAG8790.11413968671967216No Hit
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGAT8710.11310087273360005No Hit
GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGT8700.11297102098534104No Hit
GCACAGGACAGAGGCCAGATCTTCCTGGGAGGTGGCTGAAGAGACTTAGG8590.11154265175449189No Hit
ACCCTGTATCGCGCGCCTTTCCAGACGCTTCCACTAACACACACACTGAT8370.10868591329279362No Hit
ATGTAGGCACTGGGTGGCACGGGGTACTGGACTCCATTGATGGTGAAGAC8360.10855606154453461No Hit
GCATCACCATGAACGGAGAGGCCATCGCCTGCGCTGAGGGCTGCCAGGCC8330.10816650629975756No Hit
CCCCTGGGAAGAACAGTCAGGAGAATTAGATACATCTAAAGTGGGCACAG8270.1073873958102035No Hit
GAGCAGGGTAGGCCAGGCCCATGATGCCATCAAACTGCGCATAGACGAAG8260.10725754406194449No Hit
GTCCACGGTGATCTGCCAGTAACCCTCGACGGTAACAGGCACCCAGTTCA7900.10258288112462004No Hit
CCTCTCTGCTGACCGGCCCAACCAGCCCCATTGCCAACATCCAGAGCGAC7810.10141421539028891No Hit
CCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGG7810.10141421539028891No Hit
CTGCCACTCTGGTCATCGGCGCTGAGGTAGACAGAGAAGAGGTCCTGAGA7810.10141421539028891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)