FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002131103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002131103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences742869
Sequences flagged as poor quality0
Sequence length20-100
%GC51

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47450.6387398047300399No Hit
ATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGG13500.18172786857440545No Hit
TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCC12560.16907422439218758No Hit
ATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9570.1288248668338563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)