FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002131474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002131474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1075481
Sequences flagged as poor quality0
Sequence length20-100
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT731616.802630636896422No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC29270.272157295200938No Hit
TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCC19570.1819650928282322No Hit
TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGT15050.1399373861555899No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT14350.13342867052044619No Hit
GTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCG13810.12840766131619247No Hit
TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAG13530.12580417506213498No Hit
ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAG13190.12264279889649375No Hit
TTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTT12880.1197603676866444No Hit
CTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTAC12510.11632004656521129No Hit
CCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCA10900.10135000060438075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)