FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002135051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002135051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1554208
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT56930.3662958883238279No Hit
TGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATTGACTT35140.22609586361671025No Hit
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27970.17996304226976054No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27720.17835450596059213No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18350.11806656509296054No Hit
TGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCA17240.11092466388025284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)