FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002135052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002135052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1498395
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT56320.37586884633224216No Hit
TGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATTGACTT34000.2269094597886405No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26180.1747202840372532No Hit
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25460.1699151425358467No Hit
TGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCA15980.10664744610066104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)