FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002135057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002135057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1671319
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT74260.44431972591707514No Hit
AGATCGGAAGAGCACACGTCAGAACTCCAGTCACCACGTCTAATCTCGTA54460.3258504211344453TruSeq Adapter, Index 7 (97% over 35bp)
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33060.19780783919766365No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA27820.16645535651781618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)