FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002135121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002135121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2356858
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT106630.4524243717695339No Hit
AGATCGGAAGAGCACACGTCAGAACTCCAGTCACCACGTCTAATCTCGTA79890.3389682365250685TruSeq Adapter, Index 7 (97% over 35bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA73940.3137227614052268No Hit
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT46320.1965328416052219No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)