FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002135185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002135185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2287292
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT102210.4468603046746983No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA70850.30975494165152506No Hit
AGATCGGAAGAGCACACGTCAGAACTCCAGTCACCACGTCTAATCTCGTA65670.2871080736521616TruSeq Adapter, Index 7 (97% over 35bp)
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37430.16364329521547752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)