FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002135249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002135249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2346926
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT112340.4786686925791439No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA86340.367885480837487No Hit
AGATCGGAAGAGCACACGTCAGAACTCCAGTCACCACGTCTAATCTCGTA83960.3577445560703661TruSeq Adapter, Index 7 (97% over 35bp)
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41220.17563399953811923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)