FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002135250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002135250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2274502
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT111610.4907008215424739No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA81340.3576167442367604No Hit
AGATCGGAAGAGCACACGTCAGAACTCCAGTCACCACGTCTAATCTCGTA80850.3554624265003944TruSeq Adapter, Index 7 (97% over 35bp)
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41670.18320493892729045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)