FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002135313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002135313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2006493
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT92350.4602557796114913No Hit
AGATCGGAAGAGCACACGTCAGAACTCCAGTCACCACGTCTAATCTCGTA69080.3442822875534577TruSeq Adapter, Index 7 (97% over 35bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA60230.3001754803031957No Hit
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37390.1863450308573217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)