FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002147073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002147073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392915
Sequences flagged as poor quality0
Sequence length75
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT34860.8872147920033595No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23290.5927490678645508No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11180.2845399132127814No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7320.18629983584235776No Hit
ACCTTATGGTAAGTGGGTTTCCCCATTCAGACATCTCCGGATCACAGGATATTTGCCGCCTCCCCGGAGCTTTTC6970.17739205680617945No Hit
GTAATTAAGTGCATGTGGTGGATGCCTTGGCAGTCAGAGGCGAAGAAAGACGTGATAGCCTGCGAAAAGCTCCGG5940.151177735642569No Hit
TTGCAACACTATGTATTCATGTTGCAATACCTACCTTATGGTAAGTGGGTTTCCCCATTCAGACATCTCCGGATC5400.1374343051296082No Hit
GTAATTAAGTGCATGTGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGATAGCCTGCGAAAAGCTCCGG5270.1341257014875991No Hit
GTACTGAGATGTTTCACTTCCCCTCGTTCGCCTTGCAACACTATGTATTCATGTTGCAATACCTACCTTATGGTA4380.11147449193845997No Hit
TTGCAATACCTACCTTATGGTAAGTGGGTTTCCCCATTCAGACATCTCCGGATCACAGGATATTTGCCGCCTCCC4010.10205769695735718No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)