FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002148015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002148015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448088
Sequences flagged as poor quality0
Sequence length75
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA68981.5394297548695792No Hit
GTACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9390.2095570512934959No Hit
CGATTAAGCTGCTGTCTCTTATACACATCTGACGCTGCCGACGACATATATCGTGTAGATCTCGGTGGTCGCCGT7740.17273392726428738Illumina RNA PCR Primer (100% over 24bp)
GAACATGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5080.11337058792022996No Hit
GAACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4920.10979986074164004No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)