FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002151877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002151877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155257
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTGGAGTGGGGTGGGAGGTGGCTAGGCTCTGAAGCTTGGTTCTAGGATTGTTAGTTCTCATCCTCAGCACTG6260.4032024320964594No Hit
CCTCAGCACTGCGGCGGCCGAAGTCCATCCATCCATAGGCTTCTTCTTCTTCCTCCAGCCATGGTCCCTGCTTCT4420.28468925716714866No Hit
GTTCTAGGATTGTTAGTTCTCATCCTCAGCACTGCGGCGGCCGAAGTCCATCCATCCATAGGCTTCTTCTTCTTC3330.2144830828883722No Hit
GTGTGTGTATGTGCTGATCTTTGCACTGGCTCTGGCCGCCTTCTCTGAAGCTTCTTGGAAGCCCCGCTCCCAGCA2930.18871934920808722No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGAAATTTTTAATGCAGGTTTGGTAGTT2450.1578028687917453No Hit
GTGTGTATGTGCTGATCTTTGCACTGGCTCTGGCCGCCTTCTCTGAAGCTTCTTGGAAGCCCCGCTCCCAGCAGC2340.15071784202966693No Hit
GACCTGAGAGGCACCAGGCCCAGCCGTGGCACCACACACCTCCCAGCTCTGCAGACGAGATGCAGCGACTGTGTG2310.14878556200364557No Hit
GACCTGAGAGGCACCAGGCCCAGCCGTGGCACCACACACCTCCCAGCTCTGCAGACGAGATGCAGCGACTATGTG2280.1468532819776242No Hit
GGTCTGCCACGAGGTGTGGGGGACCCTGGGGTCCCAGCTGCCTTCGATGATGAGAGGCTGGGCCCTGCTGCTCCA2270.14620918863561708No Hit
GGTGGGAGGTGGCTAGGCTCTGAAGCTTGGTTCTAGGATTGTTAGTTCTCATCCTCAGCACTGCGGCGGCCGAAG2210.14234462858357433No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAA1980.1275304817174105No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA1970.12688638837540336No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG1880.12108954829733924No Hit
GTGTGGGGGACCCTGGGGTCCCAGCTGCCTTCGATGATGAGAGGCTGGGCCCTGCTGCTCCAGCCAGGGTAGCTC1850.11915726827131788No Hit
CTTAGGTACAGGGGCCAACAGGGACCTGGAGCTACCCTGGCTGGAGCAGCAGGGCCCAGCCTCTCATCATCGAAG1840.11851317492931074No Hit
TCCATAGGCTTCTTCTTCTTCCTCCAGCCATGGTCCCTGCTTCTTGGACGGGTCTGCCACGAGGTGTGGGGGACC1830.11786908158730362No Hit
GGGGTGGGAGGTGGCTAGGCTCTGAAGCTTGGTTCTAGGATTGTTAGTTCTCATCCTCAGCACTGCGGCGGCCGA1760.11336042819325377No Hit
GTGTATGTGCTGATCTTTGCACTGGCTCTGGCCGCCTTCTCTGAAGCTTCTTGGAAGCCCCGCTCCCAGCAGCCA1680.10820768145719678No Hit
CCCTTAGGTACAGGGGCCAACAGGGACCTGGAGCTACCCTGGCTGGAGCAGCAGGGCCCAGCCTCTCATCATCGA1670.10756358811518967No Hit
GGACAGGGCTGGAGTGGGGTGGGAGGTGGCTAGGCTCTGAAGCTTGGTTCTAGGATTGTTAGTTCTCATCCTCAG1660.10691949477318254No Hit
GTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTT1640.10563130808916828No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCG1630.10498721474716116No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAG1610.1036990280631469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)