FastQCFastQC Report
Mon 6 Mar 2023
EGAF00002168567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002168567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114493011
Sequences flagged as poor quality0
Sequence length20-95
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCT1646390.14379829699823335No Hit
GCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTT1384670.12093925977717539No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCT1328000.11598961267600867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)