FastQCFastQC Report
Fri 10 Feb 2023
EGAF00002168568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002168568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118534038
Sequences flagged as poor quality0
Sequence length20-125
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCT2760100.23285294642539722No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT2157550.18201944659980285No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT1553610.13106868087966428No Hit
GGGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCC1456070.12283982091287568No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1421840.1199520428047849No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)