FastQCFastQC Report
Fri 24 Mar 2023
EGAF00002168646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002168646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68588086
Sequences flagged as poor quality0
Sequence length20-125
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1400270.20415644781223374No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1066010.15542203641606211No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT858730.1252010443912956No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT844610.12314237781762855No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA768990.11211713941106333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)