FastQCFastQC Report
Thu 9 Feb 2023
EGAF00002168673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002168673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences148578063
Sequences flagged as poor quality0
Sequence length20-95
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTC3570140.2402871546387033No Hit
ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGC2216660.1491916071082445No Hit
CGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTACTTCCTCTAGATA1648180.11093023873921415No Hit
CCACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGCCGAGG1623140.10924492938099482No Hit
TTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGT1566880.10545836769994774No Hit
ACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTA1496240.10070396462228748No Hit
GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTC1492450.10044887985920237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)