FastQCFastQC Report
Tue 24 Jan 2023
EGAF00002168676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002168676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences197006696
Sequences flagged as poor quality0
Sequence length20-95
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGC15600530.7918781603240532No Hit
GTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGG6574060.333697287121652No Hit
TAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGCT5455780.27693373427266654No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG4731360.2401623952923915No Hit
GTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAAACGGC4688080.2379655156492752No Hit
GCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGG4383300.22249497550073122No Hit
CTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACC3906460.19829072205748782No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAG3559640.18068624428887434No Hit
ATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGCTTCCATGTGA3542720.17982739023246194No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC3419870.17359156157819122No Hit
GAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAA3313200.16817702480528884No Hit
GTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGG3026410.15361965158788307No Hit
TAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGCTTCC2980600.15129434991387297No Hit
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCAC2681870.136130905926162No Hit
GAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAG2680910.1360821766179968No Hit
CGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGA2657330.13488526298618805No Hit
CCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTC2653060.13466851908424474No Hit
GGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCT2574800.13069606527485747No Hit
AGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGCTT2294710.11647878202068827No Hit
ACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGC2169830.11013991118352646No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA2128510.10804252054458088No Hit
ATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGGCATGCTAACTAG2090730.10612481922949461No Hit
TTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTAT2020000.10253458593102846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)