FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002168679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002168679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25366701
Sequences flagged as poor quality0
Sequence length59-76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGG290240.11441771635972686No Hit
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGAT278750.10988815613035371No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCC254260.1002337670949013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)